Commit fd5736f3 authored by Ondrej Tichacek's avatar Ondrej Tichacek
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Update file README.md

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@@ -70,19 +70,24 @@ srun gmx_mpi mdrun -deffnm ${NAME} -nsteps -1 -v -maxh 1
- **Number atoms:** 149261


## 1. Tests scaling in the cpu nodes
## Tests 1-4 (SCALING over network)
- **Special test conditions:**
   - All tasks in the test need to be run sequentially without interruption to ensure that some jobs eventually use nodes placed in different sections of the cluster.
   - Only 36 cores can be used for each node in this test.
   - No GPU is allowed (if present in the node)

- **Short description of the test**: Full (36 cores max) occupation of the computational nodes using 1 or more nodes per job. There might be few unallocated nodes if the number of computational nodes is not a multiple of number of computational nodes per job in each task.
- **Storage for tasks:** This test must try all 5 different NFS shares in storage1, storage2, scratch1,  scratch2, cryo2.

### 1. Tests scaling in the cpu nodes
- **Test name:** scaling_test_cpu
- **Nodes involved**: cpu computational nodes
- **Short description of the test**: Full (36 cores max) occupation of the computational nodes using 1 or more nodes per job. There might be few unallocated nodes if $N_{cpu}$ is not a multiple of $N^{\text{scaling\_test\_cpu}}_{task,job}$.
- **Number of tasks:** 11 x 5
- **Storage for tasks:** This test must try all 5 different NFS shares in storage1, storage2, scratch1,  scratch2, cryo2.
- **Execution time per task:** 1 hour
- **Number of computational nodes per job in each task:**  $N^{\text{scaling\_test\_cpu}}_{\text{task,job}}$ = [1, 2, 4, 6, 8, 10, 12, 14, 16, 18 and 20] Nodes.
- **Total duration test:** $\sim 1 \text{ hour per task} \times N^{\text{scaling\_test\_cpu}}_{\text{task,job}} \times 5 \text{ storages}$
- **Number of simultaneous jobs in each task:** $J_{cpu}^{max}$
- **Special test conditions:**
   - All tasks in the test need to be run sequentially without interruption to ensure that some jobs eventually use nodes placed in different sections of the cluster.
   - Only 36 cores can be used for each node in this test.

- **Current performance in aurum for each job:**

2 x Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz per node
@@ -97,16 +102,11 @@ The results for the same number of nodes with the number of cores per node restr
## 2. Tests scaling in the bigmem nodes
- **Test name:**: scaling_test_mem
- **Nodes involved**: big memory cpu computational nodes
- **Short description of the test**: Full (36 cores max) occupation of the computational nodes using 1 or more nodes per job. There might be few unallocated nodes if $N_{mem}$ is not a multiple of $N^{\text{scaling\_test\_mem}}_{task,job}$.
- **Number of tasks:** 2 x 5
- **Storage for tasks:** This test must try all 5 different NFS shares in storage1, storage2, scratch1,  scratch2, cryo2.
- **Execution time per task:** 1 hour
- **Number of computational nodes per job in each task:**  $N^{\text{scaling\_test\_men}}_{\text{task,job}}$ = [1, 2] Nodes.
- **Total duration test:** $\sim 1 \text{ hour per task} \times N^{\text{scaling\_test\_men}}_{\text{task,job}} \times 5 \text{ storages}$
- **Number of simultaneous jobs in each task:** $J_{mem}^{max}$
- **Special test conditions:**
   - All tasks in the test need to be run sequentially without interruption to ensure that some jobs eventually use nodes placed in different sections of the cluster.
   - Only 36 cores can be used for each node in this test.
- **Current performance in aurum for each job:**

2 x Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz per node
@@ -122,18 +122,13 @@ The results for the same number of nodes with the number of cores per node restr
## 3. Tests scaling in the gpu nodes
- **Test name:**: scaling_test_gpu
- **Nodes involved**: gpu computational nodes
- **Short description of the test**: Full (36 cores max) occupation of the computational nodes using 1 or more nodes per job. There might be few unallocated nodes if $N_{gpu}$ is not a multiple of $N^{\text{scaling\_test\_gpu}}_{task,job}$.
- **Number of tasks:** 2 x 5
- **Storage for tasks:** This test must try all 5 different NFS shares in storage1, storage2, scratch1,  scratch2, cryo2.
- **Execution time per task:** 1 hour
- **Number of computational nodes per job in each task:**  $N^{\text{scaling\_test\_gpu}}_{\text{task,job}}$ = [1, 2, 4, 6, 8, 10, 12, 14, 16, 18 and 20] Nodes.
- **Number of cores per node:** Only 36 cores can be used for each node in this test 
- **Total duration test:** $\sim 1 \text{ hour per task} \times N^{\text{scaling\_test\_gpu}}_{\text{task,job}} \times 5 \text{ storages}$
- **Number of simultaneous jobs in each task:** $J_{gpu}^{max}$
- **Special test conditions:**
   - All tasks in the test need to be run sequentially without interruption to ensure that some jobs eventually use nodes placed in different sections of the cluster.
   - Only 36 cores can be used for each node in this test.
   - No GPU is allowed

- **Current performance in aurum for each job:**

2 x Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz per node
@@ -150,17 +145,11 @@ The results for the same number of nodes with the number of cores per node restr
## 4. Tests scaling in the biggpu nodes (CPU only)
- **Test name:**: scaling_test_biggpu
- **Nodes involved**: gpu computational nodes
- **Short description of the test**: Full (36 cores max) occupation of the computational nodes using 1 or more nodes per job. There might be few unallocated nodes if $N_{biggpu}$ is not a multiple of $N^{\text{scaling\_test\_gpu}}_{task,job}$.
- **Number of tasks:** 5 x 5
- **Storage for tasks:** This test must try all 5 different NFS shares in storage1, storage2, scratch1,  scratch2, cryo2.
- **Execution time per task:** 1 hour
- **Number of computational nodes per job in each task:**  $N^{\text{scaling\_test\_biggpu}}_{\text{task,job}}$ = [1, 2, 4, 6, 8] Nodes.
- **Total duration test:** $\sim 1 \text{ hour per task} \times N^{\text{scaling\_test\_biggpu}}_{\text{task,job}} \times 5 \text{ storages}$
- **Number of simultaneous jobs in each task:** $J_{biggpu}^{max}$
- **Special test conditions:**
   - All tasks in the test need to be run sequentially without interruption to ensure that some jobs eventually use nodes placed in different sections of the cluster.
   - Only 36 cores can be used for each node in this test.
   - No GPU is allowed
- **Current performance in aurum for each job:**

2 x Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz per node